Sfoglia per Autore
A single cell RNAseq benchmark experiment embedding "controlled" cancer heterogeneity
2024-01-01 Arigoni, Maddalena; Ratto, Maria Luisa; Riccardo, Federica; Balmas, Elisa; Calogero, Lorenzo; Cordero, Francesca; Beccuti, Marco; Calogero, Raffaele A; Alessandri, Luca
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications
2024-01-01 Alessandri, Simone; Ratto, Maria L.; Rabellino, Sergio; Piacenti, Gabriele; Contaldo, Sandro Gepiro; Pernice, Simone; Beccuti, Marco; Calogero, Raffaele A.; Alessandri, Luca
Promiscuous recognition of MR1 drives self-reactive mucosal-associated invariant T cell responses
2023-01-01 Chancellor, Andrew; Alan Simmons, Robert; Khanolkar, Rahul C; Nosi, Vladimir; Beshirova, Aisha; Berloffa, Giuliano; Colombo, Rodrigo; Karuppiah, Vijaykumar; Pentier, Johanne M; Tubb, Vanessa; Ghadbane, Hemza; Suckling, Richard J; Page, Keith; Crean, Rory M; Vacchini, Alessandro; De Gregorio, Corinne; Schaefer, Verena; Constantin, Daniel; Gligoris, Thomas; Lloyd, Angharad; Hock, Miriam; Srikannathasan, Velupillai; Robinson, Ross A; Besra, Gurdyal S; van der Kamp, Marc W; Mori, Lucia; Calogero, Raffaele; Cole, David K; De Libero, Gennaro; Lepore, Marco
Single-Cell RNAseq Clustering
2023-01-01 Beccuti M.; Calogero R.A.
Targeting CCR7-PI3Kγ overcomes resistance to tyrosine kinase inhibitors in ALK-rearranged lymphoma
2023-01-01 Mastini, Cristina; Campisi, Marco; Patrucco, Enrico; Mura, Giulia; Ferreira, Antonio; Costa, Carlotta; Ambrogio, Chiara; Germena, Giulia; Martinengo, Cinzia; Peola, Silvia; Mota, Ines; Vissio, Elena; Molinaro, Luca; Arigoni, Maddalena; Olivero, Martina; Calogero, Raffaele; Prokoph, Nina; Tabbò, Fabrizio; Shoji, Brent; Brugieres, Laurence; Geoerger, Birgit; Turner, Suzanne D; Cuesta-Mateos, Carlos; D'Aliberti, Deborah; Mologni, Luca; Piazza, Rocco; Gambacorti-Passerini, Carlo; Inghirami, Giorgio G; Chiono, Valeria; Kamm, Roger D; Hirsch, Emilio; Koch, Raphael; Weinstock, David M; Aster, Jon C; Voena, Claudia; Chiarle, Roberto
CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system
2023-01-01 Pernice, Simone; Sirovich, Roberta; Grassi, Elena; Viviani, Marco; Ferri, Martina; Sassi, Francesco; Alessandrì, Luca; Tortarolo, Dora; Calogero, Raffaele A; Trusolino, Livio; Bertotti, Andrea; Beccuti, Marco; Olivero, Martina; Cordero, Francesca
Circulating hsa-miR-5096 predicts 18F-FDG PET/CT positivity and modulates somatostatin receptor 2 expression: a novel miR-based assay for pancreatic neuroendocrine tumors
2023-01-01 Bocchini, Martine; Tazzari, Marcella; Ravaioli, Sara; Piccinini, Filippo; Foca, Flavia; Tebaldi, Michela; Nicolini, Fabio; Grassi, Ilaria; Severi, Stefano; Calogero, Raffaele Adolfo; Arigoni, Maddalena; Schrader, Joerg; Mazza, Massimiliano; Paganelli, Giovanni
Single-Cell RNAseq Complexity Reduction
2023-01-01 Cordero, Francesca; Calogero, Raffaele A
Single-Cell RNAseq Data QC and Preprocessing
2023-01-01 Olivero, Martina; Calogero, Raffaele A
p140Cap inhibits β-Catenin in the breast cancer stem cell compartment instructing a protective anti-tumor immune response
2023-01-01 Salemme, Vincenzo; Vedelago, Mauro; Sarcinella, Alessandro; Moietta, Federico; Piccolantonio, Alessio; Moiso, Enrico; Centonze, Giorgia; Manco, Marta; Guala, Andrea; Lamolinara, Alessia; Angelini, Costanza; Morellato, Alessandro; Natalini, Dora; Calogero, Raffaele; Incarnato, Danny; Oliviero, Salvatore; Conti, Laura; Iezzi, Manuela; Tosoni, Daniela; Bertalot, Giovanni; Freddi, Stefano; Tucci, Francesco A; De Sanctis, Francesco; Frusteri, Cristina; Ugel, Stefano; Bronte, Vincenzo; Cavallo, Federica; Provero, Paolo; Gai, Marta; Taverna, Daniela; Turco, Emilia; Pece, Salvatore; Defilippi, Paola
Functional-Feature-Based Data Reduction Using Sparsely Connected Autoencoders
2023-01-01 Alessandri, Luca; Calogero, Raffaele A
Surface protein and functional analyses identify CD4+CD39+ TCR αβ+ and activated TCR Vδ1+ cells with distinct pro-inflammatory functions in Crohn's Disease lesions
2023-01-01 Devan, Jan; Nosi, Vladimir; Spagnuolo, Julian; Chancellor, Andrew; Beshirova, Aisha; Pedro Loureiro, J; Vacchini, Alessandro; Niess, Jan Hendrik; Calogero, Raffaele; Mori, Lucia; De Libero, Gennaro; Hruz, Petr
RNAseq Analysis of Livers from Pigs Treated with Testosterone and Nandrolone Esters: Selection and Field Validation of Transcriptional Biomarkers
2023-01-01 Benedetto, Alessandro; Šťastný, Kamil; Giaccio, Nunzia; Marturella, Marianna; Biasibetti, Elena; Arigoni, Maddalena; Calogero, Raffaele; Gili, Marilena; Pezzolato, Marzia; Tošnerová, Kristína; Hodkovicová, Nikola; Faldyna, Martin; Puleio, Roberto; Bozzo, Giancarlo; Bozzetta, Elena
Using "Galaxy-rCASC": A Public Galaxy Instance for Single-Cell RNA-Seq Data Analysis
2023-01-01 Mandreoli, Pietro; Alessandri, Luca; Calogero, Raffaele A; Tangaro, Marco Antonio; Zambelli, Federico
Circulating Extracellular Vesicles Contain Liver-Derived RNA Species as Indicators of Severe Cholestasis-Induced Early Liver Fibrosis in Mice
2022-01-01 Fagoonee, Sharmila; Arigoni, Maddalena; Manco, Marta; Olivero, Martina; Bizzaro, Francesca; Magagnotti, Cinzia; Andolfo, Annapaola; Miniscalco, Barbara; Forni, Marco; Todeschi, Stefano; Tolosano, Emanuela; Bocchietto, Elena; Calogero, Raffaele; Altruda, Fiorella
Stardust: improving spatial transcriptomics data analysis through space-aware modularity optimization-based clustering
2022-01-01 Avesani, Simone; Viesi, Eva; Alessandrì, Luca; Motterle, Giovanni; Bonnici, Vincenzo; Beccuti, Marco; Calogero, Raffaele; Giugno, Rosalba
Extracellular Vesicles Derived From Plasma of Patients With Neurodegenerative Disease Have Common Transcriptomic Profiling
2022-01-01 Sproviero D.; Gagliardi S.; Zucca S.; Arigoni M.; Giannini M.; Garofalo M.; Fantini V.; Pansarasa O.; Avenali M.; Ramusino M.C.; Diamanti L.; Minafra B.; Perini G.; Zangaglia R.; Costa A.; Ceroni M.; Calogero R.A.; Cereda C.
Regulation of CD45 phosphatase by oncogenic ALK in anaplastic large cell lymphoma
2022-01-01 Mura, Giulia; Karaca Atabay, Elif; Menotti, Matteo; Martinengo, Cinzia; Ambrogio, Chiara; Giacomello, Gloria; Arigoni, Maddalena; Olivero, Martina; Calogero, Raffaele A; Chiarle, Roberto; Voena, Claudia
MET∆14 promotes a ligand-dependent, AKT-driven invasive growth
2022-01-01 Cerqua, Marina; Botti, Orsola; Arigoni, Maddalena; Gioelli, Noemi; Serini, Guido; Calogero, Raffaele; Boccaccio, Carla; Comoglio, Paolo M; Altintas, Dogus M
Sparsely-connected autoencoder (SCA) for single cell RNAseq data mining
2021-01-01 Luca Alessandri, Francesca Cordero, Marco Beccuti, Nicola Licheri, Maddalena Arigoni, Martina Olivero, Maria Flavia Di Renzo, Anna Sapino, Raffaele Calogero
| Titolo | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|
| A single cell RNAseq benchmark experiment embedding "controlled" cancer heterogeneity | 2024 | Arigoni, Maddalena; Ratto, Maria Luisa; Riccardo, Federica; Balmas, Elisa; Calogero, Lorenzo; Cordero, Francesca; Beccuti, Marco; Calogero, Raffaele A; Alessandri, Luca | |
| CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications | 2024 | Alessandri, Simone; Ratto, Maria L.; Rabellino, Sergio; Piacenti, Gabriele; Contaldo, Sandro Gepiro; Pernice, Simone; Beccuti, Marco; Calogero, Raffaele A.; Alessandri, Luca | |
| Promiscuous recognition of MR1 drives self-reactive mucosal-associated invariant T cell responses | 2023 | Chancellor, Andrew; Alan Simmons, Robert; Khanolkar, Rahul C; Nosi, Vladimir; Beshirova, Aisha; Berloffa, Giuliano; Colombo, Rodrigo; Karuppiah, Vijaykumar; Pentier, Johanne M; Tubb, Vanessa; Ghadbane, Hemza; Suckling, Richard J; Page, Keith; Crean, Rory M; Vacchini, Alessandro; De Gregorio, Corinne; Schaefer, Verena; Constantin, Daniel; Gligoris, Thomas; Lloyd, Angharad; Hock, Miriam; Srikannathasan, Velupillai; Robinson, Ross A; Besra, Gurdyal S; van der Kamp, Marc W; Mori, Lucia; Calogero, Raffaele; Cole, David K; De Libero, Gennaro; Lepore, Marco | |
| Single-Cell RNAseq Clustering | 2023 | Beccuti M.; Calogero R.A. | |
| Targeting CCR7-PI3Kγ overcomes resistance to tyrosine kinase inhibitors in ALK-rearranged lymphoma | 2023 | Mastini, Cristina; Campisi, Marco; Patrucco, Enrico; Mura, Giulia; Ferreira, Antonio; Costa, Carlotta; Ambrogio, Chiara; Germena, Giulia; Martinengo, Cinzia; Peola, Silvia; Mota, Ines; Vissio, Elena; Molinaro, Luca; Arigoni, Maddalena; Olivero, Martina; Calogero, Raffaele; Prokoph, Nina; Tabbò, Fabrizio; Shoji, Brent; Brugieres, Laurence; Geoerger, Birgit; Turner, Suzanne D; Cuesta-Mateos, Carlos; D'Aliberti, Deborah; Mologni, Luca; Piazza, Rocco; Gambacorti-Passerini, Carlo; Inghirami, Giorgio G; Chiono, Valeria; Kamm, Roger D; Hirsch, Emilio; Koch, Raphael; Weinstock, David M; Aster, Jon C; Voena, Claudia; Chiarle, Roberto | |
| CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system | 2023 | Pernice, Simone; Sirovich, Roberta; Grassi, Elena; Viviani, Marco; Ferri, Martina; Sassi, Francesco; Alessandrì, Luca; Tortarolo, Dora; Calogero, Raffaele A; Trusolino, Livio; Bertotti, Andrea; Beccuti, Marco; Olivero, Martina; Cordero, Francesca | |
| Circulating hsa-miR-5096 predicts 18F-FDG PET/CT positivity and modulates somatostatin receptor 2 expression: a novel miR-based assay for pancreatic neuroendocrine tumors | 2023 | Bocchini, Martine; Tazzari, Marcella; Ravaioli, Sara; Piccinini, Filippo; Foca, Flavia; Tebaldi, Michela; Nicolini, Fabio; Grassi, Ilaria; Severi, Stefano; Calogero, Raffaele Adolfo; Arigoni, Maddalena; Schrader, Joerg; Mazza, Massimiliano; Paganelli, Giovanni | |
| Single-Cell RNAseq Complexity Reduction | 2023 | Cordero, Francesca; Calogero, Raffaele A | |
| Single-Cell RNAseq Data QC and Preprocessing | 2023 | Olivero, Martina; Calogero, Raffaele A | |
| p140Cap inhibits β-Catenin in the breast cancer stem cell compartment instructing a protective anti-tumor immune response | 2023 | Salemme, Vincenzo; Vedelago, Mauro; Sarcinella, Alessandro; Moietta, Federico; Piccolantonio, Alessio; Moiso, Enrico; Centonze, Giorgia; Manco, Marta; Guala, Andrea; Lamolinara, Alessia; Angelini, Costanza; Morellato, Alessandro; Natalini, Dora; Calogero, Raffaele; Incarnato, Danny; Oliviero, Salvatore; Conti, Laura; Iezzi, Manuela; Tosoni, Daniela; Bertalot, Giovanni; Freddi, Stefano; Tucci, Francesco A; De Sanctis, Francesco; Frusteri, Cristina; Ugel, Stefano; Bronte, Vincenzo; Cavallo, Federica; Provero, Paolo; Gai, Marta; Taverna, Daniela; Turco, Emilia; Pece, Salvatore; Defilippi, Paola | |
| Functional-Feature-Based Data Reduction Using Sparsely Connected Autoencoders | 2023 | Alessandri, Luca; Calogero, Raffaele A | |
| Surface protein and functional analyses identify CD4+CD39+ TCR αβ+ and activated TCR Vδ1+ cells with distinct pro-inflammatory functions in Crohn's Disease lesions | 2023 | Devan, Jan; Nosi, Vladimir; Spagnuolo, Julian; Chancellor, Andrew; Beshirova, Aisha; Pedro Loureiro, J; Vacchini, Alessandro; Niess, Jan Hendrik; Calogero, Raffaele; Mori, Lucia; De Libero, Gennaro; Hruz, Petr | |
| RNAseq Analysis of Livers from Pigs Treated with Testosterone and Nandrolone Esters: Selection and Field Validation of Transcriptional Biomarkers | 2023 | Benedetto, Alessandro; Šťastný, Kamil; Giaccio, Nunzia; Marturella, Marianna; Biasibetti, Elena; Arigoni, Maddalena; Calogero, Raffaele; Gili, Marilena; Pezzolato, Marzia; Tošnerová, Kristína; Hodkovicová, Nikola; Faldyna, Martin; Puleio, Roberto; Bozzo, Giancarlo; Bozzetta, Elena | |
| Using "Galaxy-rCASC": A Public Galaxy Instance for Single-Cell RNA-Seq Data Analysis | 2023 | Mandreoli, Pietro; Alessandri, Luca; Calogero, Raffaele A; Tangaro, Marco Antonio; Zambelli, Federico | |
| Circulating Extracellular Vesicles Contain Liver-Derived RNA Species as Indicators of Severe Cholestasis-Induced Early Liver Fibrosis in Mice | 2022 | Fagoonee, Sharmila; Arigoni, Maddalena; Manco, Marta; Olivero, Martina; Bizzaro, Francesca; Magagnotti, Cinzia; Andolfo, Annapaola; Miniscalco, Barbara; Forni, Marco; Todeschi, Stefano; Tolosano, Emanuela; Bocchietto, Elena; Calogero, Raffaele; Altruda, Fiorella | |
| Stardust: improving spatial transcriptomics data analysis through space-aware modularity optimization-based clustering | 2022 | Avesani, Simone; Viesi, Eva; Alessandrì, Luca; Motterle, Giovanni; Bonnici, Vincenzo; Beccuti, Marco; Calogero, Raffaele; Giugno, Rosalba | |
| Extracellular Vesicles Derived From Plasma of Patients With Neurodegenerative Disease Have Common Transcriptomic Profiling | 2022 | Sproviero D.; Gagliardi S.; Zucca S.; Arigoni M.; Giannini M.; Garofalo M.; Fantini V.; Pansarasa O.; Avenali M.; Ramusino M.C.; Diamanti L.; Minafra B.; Perini G.; Zangaglia R.; Costa A.; Ceroni M.; Calogero R.A.; Cereda C. | |
| Regulation of CD45 phosphatase by oncogenic ALK in anaplastic large cell lymphoma | 2022 | Mura, Giulia; Karaca Atabay, Elif; Menotti, Matteo; Martinengo, Cinzia; Ambrogio, Chiara; Giacomello, Gloria; Arigoni, Maddalena; Olivero, Martina; Calogero, Raffaele A; Chiarle, Roberto; Voena, Claudia | |
| MET∆14 promotes a ligand-dependent, AKT-driven invasive growth | 2022 | Cerqua, Marina; Botti, Orsola; Arigoni, Maddalena; Gioelli, Noemi; Serini, Guido; Calogero, Raffaele; Boccaccio, Carla; Comoglio, Paolo M; Altintas, Dogus M | |
| Sparsely-connected autoencoder (SCA) for single cell RNAseq data mining | 2021 | Luca Alessandri, Francesca Cordero, Marco Beccuti, Nicola Licheri, Maddalena Arigoni, Martina Olivero, Maria Flavia Di Renzo, Anna Sapino, Raffaele Calogero |
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