Eggplant (Solanum melongena L.) is a representative of spiny Solanums which, with approximately 450 species, are the largest monophyletic group in the Solanaceae family. The inbred eggplant line '67/3' was sequenced and assembled by a combination of Illumina sequencing and optical mapping, and then was anchored to the chromosomes using a high resolution genetic map. Residual heterozygosity is estimated at 0.027%. The sequencing was done by a consortium comprising the University of Verona, the University of Turin, the Italian Council for Agricultural Research and Economics and the Italian National Agency for New Technologies, Energy and Sustainable Development. Assembly summary Sequenced strain: 67/3 Projected genome size: 1.2 Gb Number of scaffolds: 10,383 Available sequence: 1.06 Gb Anchored sequence: 825.5 Mb Anchored sequence N50: 2.9 Mb Protein coding genes: 34,916 BUSCO genes present in the annotation: 1,387 (96.3%) Anchored genes: 28,435 The eggplant genome data contained in this site are made available by the Eggplant Genome Consortium (EGC) ahead of publication for non-commercial purposes only. EGC reserves the priority to use these data for genome level analyses.
The Eggplant Genome Project
Barchi, L.;Acquadro, A.;Comino, C.;Portis, E.;Rinaldi, R.;Scaglione, D.;Lanteri, S.;
2017-01-01
Abstract
Eggplant (Solanum melongena L.) is a representative of spiny Solanums which, with approximately 450 species, are the largest monophyletic group in the Solanaceae family. The inbred eggplant line '67/3' was sequenced and assembled by a combination of Illumina sequencing and optical mapping, and then was anchored to the chromosomes using a high resolution genetic map. Residual heterozygosity is estimated at 0.027%. The sequencing was done by a consortium comprising the University of Verona, the University of Turin, the Italian Council for Agricultural Research and Economics and the Italian National Agency for New Technologies, Energy and Sustainable Development. Assembly summary Sequenced strain: 67/3 Projected genome size: 1.2 Gb Number of scaffolds: 10,383 Available sequence: 1.06 Gb Anchored sequence: 825.5 Mb Anchored sequence N50: 2.9 Mb Protein coding genes: 34,916 BUSCO genes present in the annotation: 1,387 (96.3%) Anchored genes: 28,435 The eggplant genome data contained in this site are made available by the Eggplant Genome Consortium (EGC) ahead of publication for non-commercial purposes only. EGC reserves the priority to use these data for genome level analyses.
I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
