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EnglishThe Calculus of Wrapped Compartments (CWC) is a recently proposed modelling language for the representation and simulation of biological systems behaviour. Although CWC has no explicit structure modelling a spatial geometry, its compartment labelling feature can be exploited to model various examples of spatial interactions in a natural way. However, specifying large networks of compartments may require a long modelling phase. In this work we present a surface language for CWC that provides basic constructs for modelling spatial interactions. These constructs can be compiled away to obtain a standard CWC model, thus exploiting the existing CWC simulation tool. A case study concerning the modelling of Arbuscular Mychorrizal fungi growth is discussed.
| Titolo: | A Spatial Calculus of Wrapped Compartments | |
| Autori Riconosciuti: | ||
| Autori: | Livio Bioglio; Cristina Calcagno; Mario Coppo; Ferruccio Damiani; Eva Sciacca; Salvatore Spinella; Angelo Troina | |
| Data di pubblicazione: | 2011 | |
| Abstract: | The Calculus of Wrapped Compartments (CWC) is a recently proposed modelling language for the representation and simulation of biological systems behaviour. Although CWC has no explicit structure modelling a spatial geometry, its compartment labelling feature can be exploited to model various examples of spatial interactions in a natural way. However, specifying large networks of compartments may require a long modelling phase. In this work we present a surface language for CWC that provides basic constructs for modelling spatial interactions. These constructs can be compiled away to obtain a standard CWC model, thus exploiting the existing CWC simulation tool. A case study concerning the modelling of Arbuscular Mychorrizal fungi growth is discussed. | |
| Editore: | Cornell University Library | |
| Titolo del libro: | MeCBIC 2011 | |
| Volume: | MeCBIC/2011/05 | |
| Pagina iniziale: | 25 | |
| Pagina finale: | 39 | |
| Nome del convegno: | 5th International Meeting on Membrane Computing and Biologically Inspired Process Calculi (MeCBIC'11) | |
| Luogo del convegno: | Paris (Fontainebleau), France | |
| Anno del convegno: | August 23, 2011 | |
| URL: | http://arxiv.org/abs/1108.3426v1 http://profs.info.uaic.ro/~mecbic/mecbic2011/ | |
| Parole Chiave: | Logic in Computer Science (cs.LO); Emerging Technologies (cs.ET); Quantitative Methods (q-bio.QM); Computational Engineering; Finance and Science (cs.CE) | |
| Appare nelle tipologie: | 04A-Conference paper in volume |
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